Detailed information of SNP:
|
SNP ID:
sf0506603945(Gbrowse)
Chromosome: chr05 Position: 6603945 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 94.70% | 5.30% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 421 | 84.80% | 15.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 269 | 77.70% | 22.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 93.10% | 6.90% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506603945 | A->G | LOC_Os05g11640(LOC_Os05g11640.1) | Non-Synonymous SNP |