Detailed information of SNP:
|
SNP ID:
sf0506620085(Gbrowse)
Chromosome: chr05 Position: 6620085 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 86.15% | 13.85% |
| All Indica | 768 | 87.63% | 12.37% |
| All Japonica | 489 | 82.00% | 18.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 197 | 75.63% | 24.37% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 25.00% | 75.00% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506620085 | A->G | INTERGENIC | None |