Detailed information of SNP:
|
SNP ID:
sf0506624323(Gbrowse)
Chromosome: chr05 Position: 6624323 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 83.18% | 16.82% |
| All Indica | 718 | 82.03% | 17.97% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 356 | 87.36% | 12.64% |
| Indica II | 180 | 72.22% | 27.78% |
| Indica Intermediate | 182 | 81.32% | 18.68% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506624323 | A->G | INTERGENIC | None |