Detailed information of SNP:
|
SNP ID:
sf0506629739(Gbrowse)
Chromosome: chr05 Position: 6629739 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 89.96% | 10.04% |
| All Indica | 785 | 99.87% | 0.13% |
| All Japonica | 478 | 72.38% | 27.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 60.69% | 39.31% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506629739 | T->C | LOC_Os05g11690(LOC_Os05g11690.1) | INTRON |