Detailed information of SNP:
|
SNP ID:
sf0506631736(Gbrowse)
Chromosome: chr05 Position: 6631736 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.78% | 18.22% |
| All Indica | 797 | 80.93% | 19.07% |
| All Japonica | 496 | 80.24% | 19.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506631736 | C->T | LOC_Os05g11690(LOC_Os05g11690.1) | INTRON |