Detailed information of SNP:
|
SNP ID:
sf0506632122(Gbrowse)
Chromosome: chr05 Position: 6632122 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.46% | 3.54% |
| All Indica | 795 | 93.84% | 6.16% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506632122 | G->A | LOC_Os05g11690(LOC_Os05g11690.1) | Non-Synonymous SNP |