Detailed information of SNP:
|
SNP ID:
sf0506632410(Gbrowse)
Chromosome: chr05 Position: 6632410 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 81.34% | 18.66% |
| All Indica | 797 | 80.18% | 19.82% |
| All Japonica | 495 | 80.20% | 19.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506632410 | C->T | LOC_Os05g11690(LOC_Os05g11690.1) | Synonymous |