Detailed information of SNP:
SNP ID:
sf0506632778(Gbrowse)
Chromosome: chr05 Position: 6632778 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1392 | 93.10% | 6.90% |
All Indica | 774 | 87.86% | 12.14% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 371 | 95.15% | 4.85% |
Indica II | 200 | 76.50% | 23.50% |
Indica Intermediate | 203 | 85.71% | 14.29% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0506632778 | C->T | LOC_Os05g11690(LOC_Os05g11690.1) | Non-Synonymous SNP |