Detailed information of SNP:
|
SNP ID:
sf0506633806(Gbrowse)
Chromosome: chr05 Position: 6633806 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 87.28% | 12.72% |
| All Indica | 761 | 90.41% | 9.59% |
| All Japonica | 494 | 80.16% | 19.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 194 | 82.99% | 17.01% |
| Indica Intermediate | 198 | 90.40% | 9.60% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506633806 | G->A | LOC_Os05g11690(LOC_Os05g11690.1) | INTRON |