Detailed information of SNP:
|
SNP ID:
sf0506634998(Gbrowse)
Chromosome: chr05 Position: 6634998 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 79.10% | 20.90% |
| All Indica | 789 | 81.50% | 18.50% |
| All Japonica | 496 | 74.80% | 25.20% |
| Aus | 24 | 79.17% | 20.83% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 208 | 62.50% | 37.50% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506634998 | T->C | INTERGENIC | None |