Detailed information of SNP:
|
SNP ID:
sf0506638186(Gbrowse)
Chromosome: chr05 Position: 6638186 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.01% | 21.99% |
| All Indica | 799 | 72.84% | 27.16% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506638186 | T->C | INTERGENIC | None |