Detailed information of SNP:
|
SNP ID:
sf0506677935(Gbrowse)
Chromosome: chr05 Position: 6677935 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.11% | 19.89% |
| All Indica | 799 | 79.35% | 20.65% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506677935 | C->T | INTERGENIC | None |