Detailed information of SNP:
|
SNP ID:
sf0506708674(Gbrowse)
Chromosome: chr05 Position: 6708674 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 84.41% | 15.59% |
| All Indica | 798 | 80.33% | 19.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506708674 | A->G | INTERGENIC | None |