Detailed information of SNP:
|
SNP ID:
sf0506743676(Gbrowse)
Chromosome: chr05 Position: 6743676 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 59.57% | 40.43% |
| All Indica | 786 | 30.66% | 69.34% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 366 | 22.40% | 77.60% |
| Indica II | 211 | 39.34% | 60.66% |
| Indica Intermediate | 209 | 36.36% | 63.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506743676 | C->T | INTERGENIC | None |