Detailed information of SNP:
|
SNP ID:
sf0506744775(Gbrowse)
Chromosome: chr05 Position: 6744775 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.32% | 49.68% |
| All Indica | 799 | 80.10% | 19.90% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506744775 | G->C | INTERGENIC | None |