Detailed information of SNP:
|
SNP ID:
sf0506746717(Gbrowse)
Chromosome: chr05 Position: 6746717 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.32% | 49.68% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506746717 | T->G | INTERGENIC | None |