Detailed information of SNP:
|
SNP ID:
sf0506747722(Gbrowse)
Chromosome: chr05 Position: 6747722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.56% | 49.44% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506747722 | G->A | INTERGENIC | None |