Detailed information of SNP:
|
SNP ID:
sf0506748645(Gbrowse)
Chromosome: chr05 Position: 6748645 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.67% | 49.33% |
| All Indica | 797 | 21.83% | 78.17% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 17.91% | 82.09% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 210 | 20.95% | 79.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506748645 | G->T | INTERGENIC | None |