Detailed information of SNP:
|
SNP ID:
sf0506751828(Gbrowse)
Chromosome: chr05 Position: 6751828 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 77.53% | 22.47% |
| All Indica | 766 | 60.31% | 39.69% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 38.53% | 61.47% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 203 | 77.34% | 22.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506751828 | C->G | LOC_Os05g11840(LOC_Os05g11840.1) | UTR_3_PRIME |