Detailed information of SNP:
|
SNP ID:
sf0506756472(Gbrowse)
Chromosome: chr05 Position: 6756472 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 56.98% | 43.02% |
| All Indica | 757 | 91.41% | 8.59% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 176 | 91.48% | 8.52% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506756472 | A->G | INTERGENIC | None |