Detailed information of SNP:
|
SNP ID:
sf0506760756(Gbrowse)
Chromosome: chr05 Position: 6760756 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506760756 | G->T | LOC_Os05g11860(LOC_Os05g11860.1) | Synonymous |