Detailed information of SNP:
|
SNP ID:
sf0506761802(Gbrowse)
Chromosome: chr05 Position: 6761802 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.14% | 49.86% |
| All Indica | 797 | 84.44% | 15.56% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506761802 | G->A | INTERGENIC | None |