Detailed information of SNP:
|
SNP ID:
sf0506765371(Gbrowse)
Chromosome: chr05 Position: 6765371 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 96.29% | 3.71% |
| All Indica | 680 | 92.94% | 7.06% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 312 | 98.08% | 1.92% |
| Indica II | 186 | 98.92% | 1.08% |
| Indica Intermediate | 182 | 78.02% | 21.98% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506765371 | C->T | INTERGENIC | None |