Detailed information of SNP:
|
SNP ID:
sf0506784506(Gbrowse)
Chromosome: chr05 Position: 6784506 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.16% | 37.84% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506784506 | G->A | INTERGENIC | None |