Detailed information of SNP:
|
SNP ID:
sf0506795296(Gbrowse)
Chromosome: chr05 Position: 6795296 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 88.15% | 11.85% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 471 | 73.46% | 26.54% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 88.62% | 11.38% |
| Tropical Japonica | 85 | 32.94% | 67.06% |
| Japonica Intermediate | 61 | 49.18% | 50.82% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506795296 | A->G | LOC_Os05g11940(LOC_Os05g11940.1) | INTRON |