Detailed information of SNP:
|
SNP ID:
sf0506796267(Gbrowse)
Chromosome: chr05 Position: 6796267 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 60.69% | 39.31% |
| All Indica | 789 | 97.21% | 2.79% |
| All Japonica | 488 | 1.84% | 98.16% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 61 | 3.28% | 96.72% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506796267 | C->T | LOC_Os05g11940(LOC_Os05g11940.1) | Synonymous |