Detailed information of SNP:
|
SNP ID:
sf0506826952(Gbrowse)
Chromosome: chr05 Position: 6826952 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 50.99% | 49.01% |
| All Indica | 794 | 16.62% | 83.38% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 4.55% | 95.45% |
| Indica II | 210 | 28.10% | 71.90% |
| Indica Intermediate | 210 | 26.67% | 73.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506826952 | G->T | LOC_Os05g11950(LOC_Os05g11950.1) | UTR_3_PRIME |
| sf0506826952 | G->T | LOC_Os05g11950(LOC_Os05g11950.2) | UTR_3_PRIME |