Detailed information of SNP:
|
SNP ID:
sf0506828632(Gbrowse)
Chromosome: chr05 Position: 6828632 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 78.44% | 21.56% |
| All Indica | 793 | 94.07% | 5.93% |
| All Japonica | 485 | 56.70% | 43.30% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 327 | 71.87% | 28.13% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 64 | 39.06% | 60.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506828632 | T->A | INTERGENIC | None |