Detailed information of SNP:
|
SNP ID:
sf0506828847(Gbrowse)
Chromosome: chr05 Position: 6828847 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.83% | 41.17% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506828847 | T->C | INTERGENIC | None |