Detailed information of SNP:
|
SNP ID:
sf0506835170(Gbrowse)
Chromosome: chr05 Position: 6835170 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.51% | 42.49% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506835170 | G->A | LOC_Os05g11960(LOC_Os05g11960.1) | INTRON |