Detailed information of SNP:
|
SNP ID:
sf0506840609(Gbrowse)
Chromosome: chr05 Position: 6840609 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.10% | 43.90% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506840609 | A->G | LOC_Os05g11970(LOC_Os05g11970.1) | INTRON |