Detailed information of SNP:
|
SNP ID:
sf0506844182(Gbrowse)
Chromosome: chr05 Position: 6844182 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.48% | 42.52% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506844182 | C->T | LOC_Os05g11980(LOC_Os05g11980.1) | INTRON |