Detailed information of SNP:
|
SNP ID:
sf0506846969(Gbrowse)
Chromosome: chr05 Position: 6846969 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 57.08% | 42.92% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506846969 | A->C | LOC_Os05g11980(LOC_Os05g11980.1) | Non-Synonymous SNP |