Detailed information of SNP:
|
SNP ID:
sf0506847467(Gbrowse)
Chromosome: chr05 Position: 6847467 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 92.10% | 7.90% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506847467 | T->C | LOC_Os05g11980(LOC_Os05g11980.1) | Non-Synonymous SNP |