Detailed information of SNP:
|
SNP ID:
sf0506864643(Gbrowse)
Chromosome: chr05 Position: 6864643 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.52% | 23.48% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 496 | 56.85% | 43.15% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506864643 | G->A | INTERGENIC | None |