Detailed information of SNP:
|
SNP ID:
sf0506866398(Gbrowse)
Chromosome: chr05 Position: 6866398 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.74% | 49.26% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506866398 | T->C | INTERGENIC | None |