Detailed information of SNP:
|
SNP ID:
sf0506869210(Gbrowse)
Chromosome: chr05 Position: 6869210 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.95% | 49.05% |
| All Indica | 797 | 85.32% | 14.68% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506869210 | G->A | INTERGENIC | None |