Detailed information of SNP:
|
SNP ID:
sf0506870292(Gbrowse)
Chromosome: chr05 Position: 6870292 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.73% | 42.27% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506870292 | G->A | INTERGENIC | None |