Detailed information of SNP:
|
SNP ID:
sf0506870310(Gbrowse)
Chromosome: chr05 Position: 6870310 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.69% | 42.31% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506870310 | C->T | INTERGENIC | None |