Detailed information of SNP:
|
SNP ID:
sf0506874607(Gbrowse)
Chromosome: chr05 Position: 6874607 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 50.11% | 49.89% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 488 | 1.43% | 98.57% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 63 | 4.76% | 95.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506874607 | T->C | LOC_Os05g12020(LOC_Os05g12020.1) | INTRON |