Detailed information of SNP:
|
SNP ID:
sf0506884707(Gbrowse)
Chromosome: chr05 Position: 6884707 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.21% | 49.79% |
| All Indica | 797 | 20.45% | 79.55% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 7.49% | 92.51% |
| Indica II | 212 | 41.98% | 58.02% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506884707 | A->T | LOC_Os05g12040(LOC_Os05g12040.1) | Non-Synonymous SNP |