Detailed information of SNP:
|
SNP ID:
sf0506891746(Gbrowse)
Chromosome: chr05 Position: 6891746 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 76.41% | 23.59% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 496 | 58.67% | 41.33% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506891746 | A->G | INTERGENIC | None |