Detailed information of SNP:
|
SNP ID:
sf0506893453(Gbrowse)
Chromosome: chr05 Position: 6893453 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 77.21% | 22.79% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 495 | 60.61% | 39.39% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 74.33% | 25.67% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506893453 | C->A | INTERGENIC | None |