Detailed information of SNP:
|
SNP ID:
sf0506898616(Gbrowse)
Chromosome: chr05 Position: 6898616 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 76.39% | 23.61% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 58.35% | 41.65% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506898616 | C->T | LOC_Os05g12060(LOC_Os05g12060.1) | Non-Synonymous SNP |