Detailed information of SNP:
|
SNP ID:
sf0506900273(Gbrowse)
Chromosome: chr05 Position: 6900273 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 77.21% | 22.79% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 496 | 59.48% | 40.52% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 73.73% | 26.27% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506900273 | G->A | INTERGENIC | None |