Detailed information of SNP:
|
SNP ID:
sf0506904907(Gbrowse)
Chromosome: chr05 Position: 6904907 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 66.47% | 33.53% |
| All Indica | 757 | 74.90% | 25.10% |
| All Japonica | 496 | 58.67% | 41.33% |
| Aus | 57 | 54.39% | 45.61% |
| Indica I | 356 | 83.43% | 16.57% |
| Indica II | 205 | 64.39% | 35.61% |
| Indica Intermediate | 196 | 70.41% | 29.59% |
| Temperate Japonica | 335 | 73.73% | 26.27% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506904907 | T->C | INTERGENIC | None |