Detailed information of SNP:
|
SNP ID:
sf0506933001(Gbrowse)
Chromosome: chr05 Position: 6933001 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.01% | 42.99% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506933001 | C->T | INTERGENIC | None |