Detailed information of SNP:
|
SNP ID:
sf0506936813(Gbrowse)
Chromosome: chr05 Position: 6936813 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506936813 | G->A | LOC_Os05g12140(LOC_Os05g12140.2) | UTR_3_PRIME |
| sf0506936813 | G->A | LOC_Os05g12140(LOC_Os05g12140.1) | UTR_3_PRIME |