Detailed information of SNP:
|
SNP ID:
sf0506941948(Gbrowse)
Chromosome: chr05 Position: 6941948 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 53.78% | 46.22% |
| All Indica | 764 | 25.39% | 74.61% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 64 | 35.94% | 64.06% |
| Indica I | 364 | 15.66% | 84.34% |
| Indica II | 209 | 43.06% | 56.94% |
| Indica Intermediate | 191 | 24.61% | 75.39% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506941948 | A->T | LOC_Os05g12150(LOC_Os05g12150.1) | UTR_3_PRIME |