Detailed information of SNP:
|
SNP ID:
sf0506942384(Gbrowse)
Chromosome: chr05 Position: 6942384 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 97.13% | 2.87% |
| All Indica | 779 | 95.76% | 4.24% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 362 | 94.48% | 5.52% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506942384 | A->C | LOC_Os05g12150(LOC_Os05g12150.1) | Non-Synonymous SNP |